I recently had to replace my evaporator in my 00 XJ, so I know enough about the system to help you decide how much work would go into it. Inside the vehicle you would have to take your steering column out and take your dash out to get to the air box. This was a big job. At that point, I assume it would be the same box as an AC model, just missing the evaporator part. If not, I guess you would have to get a junkyard box. A new evap from the dealer costs $400, but you can find aftermarket for a little over $100. I personally wouldn't want to put in a used evap because it is so much work to get to if its bad or goes bad. The evap has an inlet and outlet that goes through the firewall just like the heater core. I'd assume you'd need a new control box for the AC upgrade too.
Under the hood shouldn't be too bad because everything is pretty accessable. You would need to study another TJ, get the parts and put them in. A junkyard condenser might be worthwhile over a new one since its much easier to get to than an evap.
You can get a vacuum pump just for this from Harbor Freight for about $15. It runs off an air compressor and draws the necessary vacuum on your system before you charge it. The same place sells the manifold to charge the system with the high and low side gauges for about $60.
J