I ran both the diff's into the airbox for my snorkel along with the t-case breather. The transmission doesn't have an external breather but I was told if I ever need to pull the transmission for any reason, there's a way of extending the breather out. For my distributor, I used dielectric grease at all the plug ends, siliconed the cap down and ran a hose from the breather into the airbox. The intake for my aircompressor also runs into the airbox. For the fusebox, haven't done anything yet but eventually, I'd like to rewire it into a marine one. The computer is a little harder to waterproof since it needs air for cooling. I sprayed it with this electrical waterproofing stuff I found at an autoparts store and if I'm going in real deep, I'll just put a plastic bag over it. I've also put dielectric silicone into almost all electrical connections and sprayed them with this electrical waterproofing stuff. I've ran a bead of silicone around any kind of a air/breather hose in the engine compartment including on the valve cover where the pcv valves enter. Haven't done anything with the gas cap yet, but I'm gonna get a cap that seals on tightly and run some kind of a breather somewhere (haven't decided where yet).